One can write an expression set into a csv file using
csv.write. For example, using the standard bladderbatch bioconductor package the following code writes a csv file to the current working drectory:
library("bladderbatch") data("bladderdata") write.csv(bladderEset, "bladderEset.csv")
Is there a tool which can read the produced csv file back into R as an expressionSet?
If not, is there a
eset ↔ csv serialiser/deserialiser, which can both output esets as csv files and read csv files as esets?
The reason I'm asking is because I need to interact with esets with python and java code, and I can easily work with "csv" files, but not with ".rda", ".CEL" or other binary files.