Question: Ballgown library load
0
gravatar for amy16
17 months ago by
amy1640
amy1640 wrote:
> library(ballgown)
Error: package or namespace load failed for ‘ballgown’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
 there is no package called ‘GenomeInfoDbData’

Can someone kindly explain to me how I go about fixing this error?

rna-seq ballgown • 798 views
ADD COMMENTlink modified 17 months ago by h.mon25k • written 17 months ago by amy1640

May be this answer will be helpful to solve the issue.

ADD REPLYlink modified 17 months ago • written 17 months ago by rice.researcher130

there is no package called ‘GenomeInfoDbData’

ADD REPLYlink written 17 months ago by cpad011211k
1
gravatar for h.mon
17 months ago by
h.mon25k
Brazil
h.mon25k wrote:

A suggestion: try installing GenomeInfoDbData. When you installed ballgown, the biocLite() function shuld have taken care of dependencies, I guess GenomeInfoDbData installation failed but you didn't notice.

P.S.: when asking question about R, it is always useful to paste the output of sessionInfo().

ADD COMMENTlink modified 17 months ago • written 17 months ago by h.mon25k

I've already installed a package called GenomeInfoDb. But then when I try to install the package GenomeInfoDbData, I get the following error. CMD.EXE was started with the above path as the current directory. UNC paths are not supported. Defaulting to Windows directory. 'C:\Program' is not recognized as an internal or external command, operable program or batch file.

ADD REPLYlink written 17 months ago by amy1640
1

So you noticed a dependency has not been installed and failed to mention this detail and to provide the failed installation error message?

You also failed to mention your particular setup, which judging from the error message (UNC paths are not supported), is quite unusual.

ADD REPLYlink written 17 months ago by h.mon25k
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