Question: Ballgown library load
0
gravatar for amy16
2.3 years ago by
amy1640
amy1640 wrote:
> library(ballgown)
Error: package or namespace load failed for ‘ballgown’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
 there is no package called ‘GenomeInfoDbData’

Can someone kindly explain to me how I go about fixing this error?

rna-seq ballgown • 1.1k views
ADD COMMENTlink modified 2.3 years ago by h.mon29k • written 2.3 years ago by amy1640

May be this answer will be helpful to solve the issue.

ADD REPLYlink modified 2.3 years ago • written 2.3 years ago by rice.researcher140

there is no package called ‘GenomeInfoDbData’

ADD REPLYlink written 2.3 years ago by cpad011212k
1
gravatar for h.mon
2.3 years ago by
h.mon29k
Brazil
h.mon29k wrote:

A suggestion: try installing GenomeInfoDbData. When you installed ballgown, the biocLite() function shuld have taken care of dependencies, I guess GenomeInfoDbData installation failed but you didn't notice.

P.S.: when asking question about R, it is always useful to paste the output of sessionInfo().

ADD COMMENTlink modified 2.3 years ago • written 2.3 years ago by h.mon29k

I've already installed a package called GenomeInfoDb. But then when I try to install the package GenomeInfoDbData, I get the following error. CMD.EXE was started with the above path as the current directory. UNC paths are not supported. Defaulting to Windows directory. 'C:\Program' is not recognized as an internal or external command, operable program or batch file.

ADD REPLYlink written 2.3 years ago by amy1640
1

So you noticed a dependency has not been installed and failed to mention this detail and to provide the failed installation error message?

You also failed to mention your particular setup, which judging from the error message (UNC paths are not supported), is quite unusual.

ADD REPLYlink written 2.3 years ago by h.mon29k
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