Question: small molecule alignment/superimposition over docked pose
gravatar for amoltej
3.3 years ago by
amoltej90 wrote:


I have generated docking poses using chimera and autodock vina. I have a separate different type glucosinolate molecule which I want to superimpose on the ligand of docked pose. Can somebody suggest me any software that I can use for this purpose? I have tried small molecule alignment function in discovery studio visualizer but it does not allow to superimpose the structure

ADD COMMENTlink modified 3.3 years ago by YaGalbi1.5k • written 3.3 years ago by amoltej90
gravatar for YaGalbi
3.3 years ago by
Biocomputing, MRC Harwell Institute, Oxford, UK
YaGalbi1.5k wrote:

I would try Pymol with the Autodock plugin. Load the molecules and use the "align" command to superimpose them.

ADD COMMENTlink written 3.3 years ago by YaGalbi1.5k
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