Question: small molecule alignment/superimposition over docked pose
gravatar for amoltej
19 months ago by
amoltej90 wrote:


I have generated docking poses using chimera and autodock vina. I have a separate different type glucosinolate molecule which I want to superimpose on the ligand of docked pose. Can somebody suggest me any software that I can use for this purpose? I have tried small molecule alignment function in discovery studio visualizer but it does not allow to superimpose the structure

ADD COMMENTlink modified 19 months ago by YaGalbi1.4k • written 19 months ago by amoltej90
gravatar for YaGalbi
19 months ago by
Biocomputing, MRC Harwell Institute, Oxford, UK
YaGalbi1.4k wrote:

I would try Pymol with the Autodock plugin. Load the molecules and use the "align" command to superimpose them.

ADD COMMENTlink written 19 months ago by YaGalbi1.4k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1892 users visited in the last hour