small molecule alignment/superimposition over docked pose
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4.6 years ago
amoltej ▴ 90

Hi,

I have generated docking poses using chimera and autodock vina. I have a separate different type glucosinolate molecule which I want to superimpose on the ligand of docked pose. Can somebody suggest me any software that I can use for this purpose? I have tried small molecule alignment function in discovery studio visualizer but it does not allow to superimpose the structure

discovery studio visualizer Chimera autodock vina • 2.9k views
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4.6 years ago
YaGalbi ★ 1.5k

I would try Pymol with the Autodock plugin. Load the molecules and use the "align" command to superimpose them.

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