Dear Biostars, Hi
I have a list of zebrafish TFs (both family and members) upregulated in my condition1 and same data for condition2. (I also have a list of all transcription factores showing blastx hit with all my RNA-seq analysis) I want to show them in a network (or maybe two networks).
I saw a similar network created using Cytoscape.
Could you please kindly help me in this issue? how to ready files as cytoscape input? how to create circular network showing each DE TFs in different colour?
or even another package/website for doing this ?
NOTE: e.g. of TFs families Up-regulated in my condition 1: