Question: Reference genome for wheat/ Triticum aestivum
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gravatar for ammarsabir15
2.2 years ago by
ammarsabir1560
ammarsabir1560 wrote:

I want to work on wheat genomics, for doing this I am not sure where to get the reference sequence for wheat because if you go to ensembl at this link wheat genome then there comes many things to download. Same happens for NCBI. I have downloaded a reference sequence from ensembl but that sequence is not showing the chromosome number and can I use that for my further analysis?

sequencing next-gen genome • 976 views
ADD COMMENTlink modified 2.2 years ago by Emily_Ensembl20k • written 2.2 years ago by ammarsabir1560
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gravatar for Emily_Ensembl
2.2 years ago by
Emily_Ensembl20k
EMBL-EBI
Emily_Ensembl20k wrote:

The latest wheat genome consists of a number of scaffolds. Where it is known which chromosome the scaffold belongs to, they contain the chromosome in the scaffold name, for example the scaffold TGACv1_scaffold_250239_3DL is part of chromosome 3DL. There is more information about the assembly here: http://plants.ensembl.org/Triticum_aestivum/Info/Annotation/

ADD COMMENTlink written 2.2 years ago by Emily_Ensembl20k

Can you please help me, How can i Download Reference genome of Wheat (triticum aestivum) as index for mapping (with RNA-seq) by HISAT2.

ADD REPLYlink written 13 months ago by hirahameed2220

Please do not add new questions to old posts. To ask a new question, start a new post.

ADD REPLYlink written 13 months ago by Emily_Ensembl20k
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