Question: phasing variants produced by varscan
gravatar for lait
3.2 years ago by
lait160 wrote:

Hi all,

does anyone know about a tool that can phase the variants produced by varscan? I have run varscan in trio mode (for father,mother and child) and have a trio vcf file as an output.

Note: no genotype calls are present in my output trio vcf file, that is why ReadBackedPhasing didnt work for me, because it requires genotype calls, and thus I have to rerun some steps from the GATK wokflow starting from the haplotypecaller step.

ADD COMMENTlink written 3.2 years ago by lait160
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1563 users visited in the last hour