Question: SNP calling from a scaffold.fa file
0
gravatar for shynilasanthi
5 days ago by
Sri Lanka
shynilasanthi30 wrote:

I have assembled my illumina Rad-seq paired end short reads using Abyss. My question is, is it possible to call SNP using a reference genome for the assemblies? the output is in fasta format. Thank you in advance.

abyss snp calling fasta • 128 views
ADD COMMENTlink modified 4 days ago by pfs170 • written 5 days ago by shynilasanthi30
3
gravatar for pfs
4 days ago by
pfs170
USA/Boston
pfs170 wrote:

Is this what you are looking for? http://sjackman.ca/abyss-activity/

ADD COMMENTlink written 4 days ago by pfs170

Thanks, @pfs! I was just about to suggest the same.

ADD REPLYlink written 4 days ago by benv620

Yes, This is exactly what I was looking for. Thank you very much!

ADD REPLYlink written 4 days ago by shynilasanthi30
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