Question: SNP calling from a scaffold.fa file
0
gravatar for shynilasanthi
11 weeks ago by
Sri Lanka
shynilasanthi30 wrote:

I have assembled my illumina Rad-seq paired end short reads using Abyss. My question is, is it possible to call SNP using a reference genome for the assemblies? the output is in fasta format. Thank you in advance.

abyss snp calling fasta • 210 views
ADD COMMENTlink modified 11 weeks ago by pfs230 • written 11 weeks ago by shynilasanthi30
3
gravatar for pfs
11 weeks ago by
pfs230
USA/Boston
pfs230 wrote:

Is this what you are looking for? http://sjackman.ca/abyss-activity/

ADD COMMENTlink written 11 weeks ago by pfs230

Thanks, @pfs! I was just about to suggest the same.

ADD REPLYlink written 11 weeks ago by benv680

Yes, This is exactly what I was looking for. Thank you very much!

ADD REPLYlink written 11 weeks ago by shynilasanthi30
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