Question: (Closed) RNA-seq analysis: How to generate a master gene expression matrix to do co-expression cross all conditions of my samples
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10 weeks ago by
sclittlerain0 wrote:

I am trying to perform gene co-expression analysis to identify the clusters of genes that co-express among all conditions of my samples (more than 2 conditions). To do that, I need to generate a master gene expression matrix that contain normalized counts or normalized FPKMs for each individual gene in all conditions. Could anyone guide me on the right way or the suitable bioinformatic packages that I can use to generate such master gene expression matrix? Thanks!

rna-seq • 126 views
ADD COMMENTlink written 10 weeks ago by sclittlerain0

Hello sclittlerain!

Questions similar to yours can already be found at:

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PS: Isn't this the same question as the link above?
ADD REPLYlink modified 10 weeks ago • written 10 weeks ago by genomax42k
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