Question: Use PWM from CISBP-rna to find motif with MEME (FIMO)
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gravatar for ZheFrench
4 days ago by
ZheFrench70
France
ZheFrench70 wrote:

MEME need a specific matrix for input. The software gives a list of utilities for conversion matrix. For example, you can convert jaspar PFM to MEME matrix input to use with FIMO and find motifs in a sequence.

CISBP-rna http://cisbp-rna.ccbr.utoronto.ca/ let access a list of PWM matrices but I don't see in MEME a conversion Tool for that format. So I was wondering how to use them with fimo or an another tool.

motif meme cisbp • 87 views
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