Question: Use PWM from CISBP-rna to find motif with MEME (FIMO)
gravatar for ZheFrench
8 months ago by
ZheFrench140 wrote:

MEME need a specific matrix for input. The software gives a list of utilities for conversion matrix. For example, you can convert jaspar PFM to MEME matrix input to use with FIMO and find motifs in a sequence.

CISBP-rna let access a list of PWM matrices but I don't see in MEME a conversion Tool for that format. So I was wondering how to use them with fimo or an another tool.

motif meme cisbp • 401 views
ADD COMMENTlink written 8 months ago by ZheFrench140
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 461 users visited in the last hour