Question: USCS visualization track for genomic bins
0
gravatar for cjgunase
12 months ago by
cjgunase20
United States
cjgunase20 wrote:

Hi, I am looking for a way to display the following information in a UCSC browser or JBrowse . Can anyone please give me an idea or method to covert the data are shown here. Or how to convert to WIG format so I can import to the browser.

Bin.Location chr Perc.Methy

49393000  19 0.9556420

180314000  19 0.7597551

25190700  19 0.7748512

25190800  19 0.7111674

28927800  19 0.8389850

.......................................

This can be shown in a Manhattan plot but I need to zoom and compare with other genomic tracks.

Thank you

ADD COMMENTlink modified 10 months ago by max10 • written 12 months ago by cjgunase20
0
gravatar for max
10 months ago by
max10
max10 wrote:

You can convert your file to bigWig format, see here: https://genome.ucsc.edu/goldenpath/help/bigWig.html

Then just paste the bigWig file URL into the custom track box and it will be shown in the UCSC browser

ADD COMMENTlink written 10 months ago by max10
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