Question: how to draw two different Y-axes with deeptools?
gravatar for edoardobertolini
2.6 years ago by
edoardobertolini0 wrote:

Hi all, I’m trying to plot the methylation distribution along a set of genes using a metagene approach including the two flanking upstream/downstream regions. In particular I would like to draw two different Y-axes: one for the symmetrical CG/CHG methylation context and a second one for the CHH, as shown in the picture below. Is it possible to specify A different Y-axis for each bigwig input FILE LOADED in deeptools? enter image description here Thanks a lot.


methylation deeptools chh • 717 views
ADD COMMENTlink modified 2.6 years ago by Devon Ryan95k • written 2.6 years ago by edoardobertolini0
gravatar for Devon Ryan
2.6 years ago by
Devon Ryan95k
Freiburg, Germany
Devon Ryan95k wrote:

I think you posted this to the deepTools google-group too. But regardless, there's no way to do this directly in deepTools. I suggest that you export the data (there's an option for that in plotProfile) and then tweak things to your liking in R.

ADD COMMENTlink written 2.6 years ago by Devon Ryan95k

I have a workflow where I did this here. It was a bit of an iterative trial&error process, but there might be some useful code scraps mixed in there.

ADD REPLYlink modified 2.6 years ago • written 2.6 years ago by steve2.5k
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