Question: how to draw two different Y-axes with deeptools?
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gravatar for edoardobertolini
20 months ago by
edoardobertolini0 wrote:

Hi all, I’m trying to plot the methylation distribution along a set of genes using a metagene approach including the two flanking upstream/downstream regions. In particular I would like to draw two different Y-axes: one for the symmetrical CG/CHG methylation context and a second one for the CHH, as shown in the picture below. Is it possible to specify A different Y-axis for each bigwig input FILE LOADED in deeptools? enter image description here Thanks a lot.

Ed

methylation deeptools chh • 543 views
ADD COMMENTlink modified 20 months ago by Devon Ryan91k • written 20 months ago by edoardobertolini0
1
gravatar for Devon Ryan
20 months ago by
Devon Ryan91k
Freiburg, Germany
Devon Ryan91k wrote:

I think you posted this to the deepTools google-group too. But regardless, there's no way to do this directly in deepTools. I suggest that you export the data (there's an option for that in plotProfile) and then tweak things to your liking in R.

ADD COMMENTlink written 20 months ago by Devon Ryan91k
1

I have a workflow where I did this here. It was a bit of an iterative trial&error process, but there might be some useful code scraps mixed in there.

ADD REPLYlink modified 20 months ago • written 20 months ago by steve2.2k
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