Beagle to plink

Question

[sandritabarral]

Hi All,

I have gprobs.tar.gz and sample files for each chromosome and I would like to have plink format files or vcfs any suggestion about which software to use?

s

Answer 1

[anp375]

I think BEAGLE does that:

http://faculty.washington.edu/browning/beagle_utilities/utilities.html#beagle2vcf