Entering edit mode
6.3 years ago
Ric
▴
430
Hi, I ran dextractor (https://github.com/thegenemyers/DEXTRACTOR) and it generated X.subreads.arrow and a FASTA file. How could I polish the reads before the assembly?
Thank you in advance.
What are you trying to do ? Assembling what?
If just going for a general bacterial assembly, canu just takes one command to polish and assemble.
If you want to follow the DAZZLER approach I think you'd best start with FALCON https://github.com/PacificBiosciences/FALCON
Yes, I try to do an assembly. On our cluster CANU makes always some problems to run and FALCON completely is not working.
Yes, I try to do an assembly. On our cluster CANU makes always some problems to run and FALCON completely is not working.