Blog: (Closed) Fundamental Analysis of TCGA RNA-seq Data-01
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gravatar for Wenhu_Cao
11 months ago by
Wenhu_Cao50
Wenhu_Cao50 wrote:

This is the first part of the overall analysis pipeline, mainly documenting introductions of important resources and the data downloading methods.

Resources

  • TCGA (The Cancer Genome Atlas)Human cancer database, on one hand, there is a huge number of molecular data (including DNA, RNA and protein levels) based on a series of collections of cancer tissue samples, tumor_matched_normal samples and a few normal tissue samples. On the other hand, it also contains multiple clinical data (such as the TNM grading of tumor, patient survival time, patients' age, sex, race and so on). Until now, it has documented nearly 2.5PB multi-level data volume of more than 10,000 patients, stretching across over 30 tumor types. From 2016, the TCGA database has migrated to GDC (Genomic Data Commons), it is said TCGA will come to close in 2017, come on, there is only 2 weeks left!

...

The overall post is here: Fundamental Analysis of TCGA RNA-seq Data-01

Welcome to my blog: bioinfostar, I would like to record and share my learning experience here, waiting for new ideas and thoughts~~~

rna-seq blog tcga R • 689 views
ADD COMMENTlink modified 11 months ago • written 11 months ago by Wenhu_Cao50

what ... exactly ... do ... you ... want?

ADD REPLYlink written 11 months ago by mforde841.2k

Sorry to separate the posts! I have made the post compilation here: Post Series: Fundamental Analysis of TCGA RNA-seq Data

ADD REPLYlink written 11 months ago by Wenhu_Cao50

A separate master post exists for this series.

Cheers!

ADD REPLYlink modified 11 months ago • written 11 months ago by genomax59k
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