Question: New element for Sequence Alignment
0
gravatar for virus_n00b
18 months ago by
virus_n00b0
India
virus_n00b0 wrote:

I have a list of sequences (12527). On this, I perform MAFFT to get the sequence alignment in clustal format. FastTree is used to generate the phylogenetic tree from the clustal format file.

Currently, if I encounter a new sequence then the entire procedure is done again to generate the new phylo tree. Is there a method where this procedure can be bypassed partially or fully (by leveraging the previous files i.e sequence aligned file and tree file) to generate the tree.

sequencing sequence • 556 views
ADD COMMENTlink modified 18 months ago by RamRS22k • written 18 months ago by virus_n00b0

maftt --add https://mafft.cbrc.jp/alignment/software/addsequences.html

ADD REPLYlink written 18 months ago by genomax68k
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