Question: (Closed) IGV Visualization Insert Size
gravatar for rse
9 weeks ago by
United States
rse30 wrote:


I have a question regarding visualization of the large structural variations through IGV. I am visualizing large variations for a case. I observe dark red, blue and green reads which denotes deletion, insertion and duplication respectively according to the IGV manual. The reads have a insert size and have a mate region in other genes/regions. I want to ask if the insert size indicate size of deletion/insertion/duplication? I am observing insert size of 3.3 Mb, but the read is only 200-300 bp.

Thank you


sequencing next-gen alignment • 193 views
ADD COMMENTlink modified 7 weeks ago by Kevin Blighe13k • written 9 weeks ago by rse30

Closed as duplicated here: IGV Visualization Insert Size

ADD REPLYlink written 7 weeks ago by Kevin Blighe13k
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