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• Prediction of lncRNA cis regulation
  Hi, I have a set of differently expressed lncRNA and mRNA data from RNA-seq, which contains the l...
• overlapping genes in lncrna prediction
  i am following a pipeline for rice lncrna identification. first i removed those with basepair len...
• how to functionally annotate lncrna in plants
  once lncrna has been identified. how to proceed on functional annotation. i need process both on ...
• Target gene of LncRNA
  How can I find the target of LncRNA? Could you introduce me some databases in this field? Which s...
• lncRNA-mRNA binding prediction database?
  Hello, Is there any database for predicted lncRNA-mRNA binding pairs? Thank you
• How to add annotation to lncRNA
  How to add annotation to lncRNA, is there any database to use? and then how to find the functi...
• Help explain novel lncRNA results
  Dear all I need a help understanding this please I am new to long non coding RNA and my backgro...
• Predicting LincRNA/LncRNA interaction with mRNA/protein of a coding gene
  I am wondering if there is a tool/method that can compute some sort of interaction score between ...
• how to use WGCNA to predict lncRNA targets?
  Hi, I found some lncRNA sequences from my RNA-seq results, and I want to find the lncRNA targets ...
• Help exploring unknown region
  Hi! I am currently doing a project that involves calling copy number variants, and then running a...
• Correlation between lncRNA and protein coding genes
  I have RNA-Seq data for 300 samples. In which 250 are Tumor and 50 are Normals. I have a matrix ...
• Estimating gene set enrichment using Fishers exact test
  Hi, I'm working with lung cancer data and I'm interested in lncRNAs, I would like to identify ln...
• Differential lncRNA-mRNA co-expression
  Hi I have 3 High-throughput RNA-Seq samples from patients with rare disease and 3 samples from ...
• Can a gene only expresses as a lncRNA？
  Is it possible that a gene is composed of exons without introns and only expresses as a lncRNA？
• How to predict the targets of Long noncoding RNA
  I identified a new long noncoding RNA and want to know its function. First i would like to pred...
• lncRNA target interaction prediction
  Dear all, As a part of a project I tried to find out if there is any interaction between a list ...
• LncRNA Differential Expression and Analysis of lncRNA and mRNA co-expression.
  Hi All, I am about to undertake RNA-Seq analysis to assess the lncRNA expression induced in vira...
• lncRNA Prediction tool
  Hello, I have a RNAseq data, I want to predict lncRNA from this data. Please help me in this rega...
• LncRNA isoforms RNA-seq
  I have filtered potential lncRNAs from a RNA-seq experiment following the usual pipeline for lncR...
• find long coding RNA's up and downstream genes
  Known lncRNA's location. How to find their up and downstream genes? By UCSC, R(TxDb.Hsapiens.UCSC...
• How to annotate coding and long non-coding RNA together using transcriptome data. My idea is to find co-expressed lncRNA with my target gene
  I am a Biologist and a novice in analysis of NGS data. I have a set of six transcriptomes. I want...