I've used DESeq2 package to analyze DEGs of my RNA-seq data, (I guess) 4 months ago, and now I wanted to double check the results by re-analyzing the data.
Although baseMean values are exactly the same, log2fc, lfcse,stat,pvlaue values have sligtly changed. What could be the reason behind it? Could it be that DESeq2 package is updated and some changes happened on statistics part of it in the past 4 months?
Thanks for your help.