Question: How to import both node and edge files into cytoscape from WGCNA?
0
gravatar for niutster
2.6 years ago by
niutster100
niutster100 wrote:

Hi,

I am a little new with cytoscape, I used exportNetworkToCytoscape command in WGCNA to export the network, the commands output cotaining nodes and edges files but in cytoscape ,only one file can be imported. do anybody know how can i import both files into cytoscape?

ADD COMMENTlink modified 17 months ago by zhaoliang03020 • written 2.6 years ago by niutster100

Are you using desktop version of Cytoscape? If so is it MAC or windows?

ADD REPLYlink written 2.6 years ago by chetana40

I use desktop version on windows.

ADD REPLYlink written 2.6 years ago by niutster100

Have you solved this problem? I just meet it and I don't know how to deal with it

ADD REPLYlink written 17 months ago by zhaoliang03020

Have you read the tutorial?; also, what have you actually tried?

ADD REPLYlink written 17 months ago by Kevin Blighe63k
1
gravatar for Kevin Blighe
2.6 years ago by
Kevin Blighe63k
Kevin Blighe63k wrote:

You should take a look at the tutorial written specifically for this by the WGCNA developers: Exporting a gene network to external visualization software

This question was also posted on Bioconductor, where one of the developers replied: WGCNA export to cytoscape.

Kevin

ADD COMMENTlink modified 2.6 years ago • written 2.6 years ago by Kevin Blighe63k
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