Question: bsseq fisherTest result
gravatar for cvu
2.2 years ago by
cvu150 wrote:

Hi all,

I've performed fisherTests() function of bsseq bioconductor package for two samples since I've only one replicate for each samples. but fishertest result gives only two columns p.value and log2OR and I want to know its corresponding chromosome and position information. also I want to filter and plot fisherTest result.

also, How do I find DMRs from FisherTest results?

Thanks in advance!! Any help appreciated!!

ADD COMMENTlink modified 2.2 years ago • written 2.2 years ago by cvu150

What command did you exactly issue? This information might allow some expert (not me!) helping you better.

Probably you have one pvalue for each input line you gave to the command, in the same order; you might check that.

ADD REPLYlink written 2.2 years ago by Fabio Marroni2.5k
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