Question: RNA seq data for prediction of novel proteins
gravatar for fatimarasool
2.4 years ago by
fatimarasool10 wrote:

I am doing research project on epilepsy disease.I have RNA -Seq reads files. I have to perform the following steps .

  1. Prediction of RNA editing sites from reads.

  2. Prediction of genes where supposed RNA editing site are predicted.

  3. Conversion of these predicted genes into protein sequence

  4. prediction of structure of the proteins. Kindly give me detail pipeline to perform these steps.

ADD COMMENTlink modified 2.4 years ago by Ram130 • written 2.4 years ago by fatimarasool10
gravatar for Ram
2.4 years ago by
Ram130 wrote:

So for your first step for prediction of RNA editing sites, you can use below mentioned pipeline :

Similarly to obtain Structure of protein you can use Protein Data Bank (PDB).

ADD COMMENTlink written 2.4 years ago by Ram130
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