Question: HyPhy or PAML: Testing Multiple Hypotheses with the same phylogeny/alignment?
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11 weeks ago by
space-slash-ellipsis0 wrote:

Is it appropriate to test for multiple hypotheses with PAML or HyPhy? Like, for example, would it be statistically valid to test two of the hypotheses listed at the bottom of this page on one alignment/phylogeny?

ADD COMMENTlink modified 13 days ago by Biostar ♦♦ 20 • written 11 weeks ago by space-slash-ellipsis0

Sure, why not? - that's how research is conducted, is it not? Provided your input data suits the conditions of each analysis protocol, there should be no issue testing different hypotheses.

ADD REPLYlink modified 11 weeks ago • written 11 weeks ago by Kevin Blighe14k
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