Creating a custom substitution matrix from multiple alignments/trees?
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4.5 years ago
Genayng • 0

Hello. I have several alignments from different trees that I would like to use to estimate a single substitution matrix. Does there exist an efficient way to do this? If you could point me in the right direction, that would be much appreciated. Thank you.

alignment substitution matrix • 1.1k views
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4.5 years ago
Asaf 8.9k

You can use BayesTraits in Multistate mode

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