Question: Issue with DEXSeq installation
0
gravatar for Yuka Takemon
14 months ago by
Yuka Takemon20
The Jackson Laboratory
Yuka Takemon20 wrote:

Hello,

I am having issues installing the DEXSeq R package. I updated both bioinstaller and GenomicRanges in order to solve the problem, but no luck. Any insights would be appreciated.

Cheers, Yuka

> biocLite("DEXSeq")
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.6 (BiocInstaller 1.28.0), R 3.4.1 (2017-06-30).
Installing package(s) ‘DEXSeq’
trying URL 'https://bioconductor.org/packages/3.6/bioc/src/contrib/DEXSeq_1.24.2.tar.gz'
Content type 'application/x-gzip' length 550421 bytes (537 KB)
==================================================
downloaded 537 KB

* installing *source* package ‘DEXSeq’ ...
** R
** inst
** preparing package for lazy loading
Warning: undefined slot classes in definition of "DEXSeqDataSet": rowRanges(class "GenomicRangesORGRangesList")
Error in makePrototypeFromClassDef(properties, ClassDef, immediate, where) :
  in making the prototype for class “DEXSeqDataSet” elements of the prototype failed to match the corresponding slot class: rowRanges (class "GenomicRangesORGRangesList" )
Error : unable to load R code in package ‘DEXSeq’
ERROR: lazy loading failed for package ‘DEXSeq’
* removing ‘/home/ytakemon/R/x86_64-pc-linux-gnu-library/3.4/DEXSeq’
bioconductor R dexseq • 581 views
ADD COMMENTlink modified 14 months ago by Hussain Ather910 • written 14 months ago by Yuka Takemon20
1
gravatar for Hussain Ather
14 months ago by
Hussain Ather910
National Institutes of Health, Bethesda, MD
Hussain Ather910 wrote:

Have you tried upgrading to the latest R version?

ADD COMMENTlink written 14 months ago by Hussain Ather910

Hi Hussain, I feel very silly that I didn't update my R version before posting. It worked on R 3.4.3. Thank you!

ADD REPLYlink written 14 months ago by Yuka Takemon20
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