bash and awk code
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6.3 years ago
Sam ▴ 150

Hello, how I can add organism name to miRNA name?

Thanks

Organism: aau,mir162,ATAAACCTCTGCATCCAG,N/A,28,22,2.19,1.82
convert to:

Organism: aau,aau-mir162,ATAAACCTCTGCATCCAG,N/A,28,22,2.19,1.82
awk bash • 1.2k views
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Is that all you need to do? Add aau to the second field?

Will the fields change in content?

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Is the organism name constant (aau)?

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yes , I need to add organism name to second file but organism name is NOT constant.

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6.3 years ago
 sed 's/Organism\: \([^,]*\),/Organism: \1,\1-/' input

e.g:

$ echo 'Organism: aau,mir162' | sed 's/Organism\: \([^,]*\),/Organism: \1,\1-/'
Organism: aau,aau-mir162
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