Question

Making a taxonomic plot for .biom file

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6.5 years ago

arunsaikirans • 0

HI all, I have made the heat maps for the biom file with respect to different levels of classification using QIIME.Now I am trying to create a taxonomic chart,more like a pie chart.

Please suggest some of the tools that can be used to create the above chart.

Kiran.

.biom taxonomic plot next-gen NGS qiime • 2.9k views

ADD COMMENT • link updated 6.5 years ago by lakhujanivijay 5.8k • written 6.5 years ago by arunsaikirans • 0

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Have you looked at KronaTools? I have never used it with QIIME though.

ADD REPLY • link 6.5 years ago by Sej Modha 5.3k

score 0 · Answer 1 · 2017-10-07

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6.5 years ago

lakhujanivijay 5.8k

Check out

http://qiime.org/scripts/plot_taxa_summary.html

prepare_taxa_charts.py: A python program to automate taxonomic pie chart generation from QIIME

ADD COMMENT • link 6.5 years ago by lakhujanivijay 5.8k

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Hi Vijay, I have made pie chart using qiime but I am trying to create with Krona could you help me. I have installed Krona and kraken,but have no idea how to proceed,i have downloaded minikraken database(4gb),need help.

ADD REPLY • link 6.3 years ago by arunsaikirans • 0

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Have you looked at this tutorial explaining how to generate Krona plot from QIIME output?

ADD REPLY • link 6.3 years ago by Sej Modha 5.3k