Question: Where to download gff3 file for EcoCyc data?
gravatar for O.rka
9 weeks ago by
O.rka30 wrote:

I'm looking for a gff3 file with EcoCyc IDs. Do I need to just download the version from Ensembl and then convert the IDs? Alternatively, is there a flat file from EcoCyc that has the positions of all of the genes in E. coli?

ecoli genes assembly gff3 • 190 views
ADD COMMENTlink modified 19 days ago by tdmurphy80 • written 9 weeks ago by O.rka30
gravatar for tdmurphy
19 days ago by
tdmurphy80 wrote:

I think EcoCyc uses the same IDs as EcoGene (EG#####), which are available on the GenBank and RefSeq annotations at NCBI. Try the "Download" links at the right from this page:

Both GFF3 and flatfiles are available.

ADD COMMENTlink written 19 days ago by tdmurphy80
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