Question: Where to download gff3 file for EcoCyc data?
0
gravatar for O.rka
3.0 years ago by
O.rka230
O.rka230 wrote:

I'm looking for a gff3 file with EcoCyc IDs. Do I need to just download the version from Ensembl and then convert the IDs? Alternatively, is there a flat file from EcoCyc that has the positions of all of the genes in E. coli?

ecoli genes assembly gff3 • 1.2k views
ADD COMMENTlink modified 2.9 years ago by tdmurphy190 • written 3.0 years ago by O.rka230
0
gravatar for tdmurphy
2.9 years ago by
tdmurphy190
tdmurphy190 wrote:

I think EcoCyc uses the same IDs as EcoGene (EG#####), which are available on the GenBank and RefSeq annotations at NCBI. Try the "Download" links at the right from this page: https://www.ncbi.nlm.nih.gov/assembly/GCF_000005845.2

Both GFF3 and flatfiles are available.

ADD COMMENTlink written 2.9 years ago by tdmurphy190
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2395 users visited in the last hour
_