How to orient and order a bundle of sequences based on a reference sequence
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6.5 years ago
Yongjie Zhang ▴ 110

Hello,

I have dozens of contig sequences representing mitochondral fragments of a species, and want to orient and order these sequences by refering to a reference mitochondrial genome sequence. I used to do it by hand, but do you know an easy way to do this? Any programs or scripts?

Thanks,

Yongjie

Orient and order sequences • 1.0k views
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blast and grep the orientation

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Dear Pierre, Could you please give more details?

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