Question: Downloading data from HMPDACC.
0
gravatar for pmorellmi
11 months ago by
pmorellmi0
pmorellmi0 wrote:

Hi! I'm trying to download some data from the HMPDACC, but when I used hmp_client tool, most of my files were in a format not compatible with it (fasp). I've read that this format uses the Aspera Connect plugin, but I've been unable to download a single file. More interesting, is there a way to download those files in bulk from the manifest? My cart have more than a thousand files, so...

Thanks for the help.

microbiome metagenomics data • 415 views
ADD COMMENTlink modified 11 months ago • written 11 months ago by pmorellmi0

You may need credentials to download some of the data. If you are behind a firewall then using Aspera may need some adjustments from your IT-admins. Look into both.

ADD REPLYlink written 11 months ago by genomax59k

I have the Aspera Connect plugin installed, but I can't access the ascp command line tool to download the +1000 files. Any advise?

ADD REPLYlink written 11 months ago by pmorellmi0
1
gravatar for pmorellmi
11 months ago by
pmorellmi0
pmorellmi0 wrote:

Ok, I figured it out: In order to download a batch of files from the fasp server, you need to download the manifest file and use the manifest2ascp.py tool from the hmp_client (https://github.com/ihmpdcc/hmp_client). It will create a .sh file, that you should run in order to download all your files.

ADD COMMENTlink written 11 months ago by pmorellmi0
0
gravatar for Hussain Ather
11 months ago by
Hussain Ather890
National Institutes of Health, Bethesda, MD
Hussain Ather890 wrote:

Try using the Aspera client https://www.hmpdacc.org/hmp/resources/download.php

ADD COMMENTlink written 11 months ago by Hussain Ather890
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