syntax error in R when run on HPC

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6.3 years ago

amy16 ▴ 40

Hi, I get following syntax error message when I run R script on HPC for DGE analysis using ballgown. any help is very much appreciated.

syntax error near unexpected token Ballgown'library(Ballgown)'

-Thanks

RNA-Seq R ballgown • 2.1k views

ADD COMMENT • link 6.3 years ago by amy16 ▴ 40

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in the R code, remove the quote after )

ADD REPLY • link 6.3 years ago by Pierre Lindenbaum 161k

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Command line: library("Ballgown") The error message: /tmp/slurmd/job5624031/slurm_script: line 15: syntax error near unexpected token "Ballgown"' /tmp/slurmd/job5624031/slurm_script: line 15:library("Ballgown")' Also, I've tried writing library(Ballgown), still the same error message.

ADD REPLY • link 6.3 years ago by amy16 ▴ 40

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Your question lacks sufficient information for us to help. Please read Tutorial: How To Ask Good Questions On Technical And Scientific Forums.

ADD REPLY • link 6.3 years ago by h.mon 35k

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