Entering edit mode
6.3 years ago
Leonida Monaco
▴
20
Hi there . I have a problem with merging two file sets with PLINK.
94 SNPs have different physical position, even if I already check about the Nomenclature. Both file sets came from hg19. But I have noticed how about 100.000 SNPs have different allele codes between the two file sets. And it is not a Flip Strand problem. I have in one data set, take this as an example but there are more, a SNP in one file sets with A/G in the other C/A.
Is there any that can help me to solve this problem?
Thanks a lot
