I'm wondering if anyone knows how I can get the trace data for each base, formatted into a text file. I've tried EMBOSS abiview and Biopython to retrieve these data. EMBOSS generates four file, such as suggested here, but the values don't seem to correlate to the chromatogram and trace values such as in the image. Biopython works to retrieve the data as dictionaries, but the in the dictionary
abif_raw, the keys DATA9-12 are missing.
Chromatogram example with trace values: