Question: available subcutaneous adipose RNA-seq
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gravatar for  DataFanatic
11 months ago by
DataFanatic110
DataFanatic110 wrote:

I'm looking for any publicly available subcutaneous adipose RNA-seq data sets containing at least 100 individuals. Thank you!

ADD COMMENTlink modified 11 months ago by kristoffer.vittingseerup980 • written 11 months ago by DataFanatic110

You could be looking for a long while if you have a specific requirement for that large a sample and/or human data. Here is all that an ENA search brings up and it includes other organisms.

ADD REPLYlink written 11 months ago by genomax59k
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gravatar for kristoffer.vittingseerup
11 months ago by
European Union
kristoffer.vittingseerup980 wrote:

The GTEx consortium have you covered - according to this there are 442 samples in relase 7

ADD COMMENTlink written 11 months ago by kristoffer.vittingseerup980

Interesting. Do you know how you can download entire datasets for each of these samples? I can't even see the individual sample ID's.

Edit: Samples are not publicly available. One needs to get approval for access to the original data via dbGaP. These are post-mortem samples.

ADD REPLYlink modified 11 months ago • written 11 months ago by genomax59k

You can download the quantifications for the individual samples here.

ADD REPLYlink written 10 months ago by kristoffer.vittingseerup980

I am excluding GTEx actually. Thanks

ADD REPLYlink written 10 months ago by DataFanatic110
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