Question: available subcutaneous adipose RNA-seq
gravatar for  DataFanatic
9 weeks ago by
DataFanatic70 wrote:

I'm looking for any publicly available subcutaneous adipose RNA-seq data sets containing at least 100 individuals. Thank you!

ADD COMMENTlink modified 9 weeks ago by kristoffer.vittingseerup430 • written 9 weeks ago by DataFanatic70

You could be looking for a long while if you have a specific requirement for that large a sample and/or human data. Here is all that an ENA search brings up and it includes other organisms.

ADD REPLYlink written 9 weeks ago by genomax43k
gravatar for kristoffer.vittingseerup
9 weeks ago by
European Union
kristoffer.vittingseerup430 wrote:

The GTEx consortium have you covered - according to this there are 442 samples in relase 7

ADD COMMENTlink written 9 weeks ago by kristoffer.vittingseerup430

Interesting. Do you know how you can download entire datasets for each of these samples? I can't even see the individual sample ID's.

Edit: Samples are not publicly available. One needs to get approval for access to the original data via dbGaP. These are post-mortem samples.

ADD REPLYlink modified 9 weeks ago • written 9 weeks ago by genomax43k

You can download the quantifications for the individual samples here.

ADD REPLYlink written 7 weeks ago by kristoffer.vittingseerup430

I am excluding GTEx actually. Thanks

ADD REPLYlink written 8 weeks ago by DataFanatic70
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