Question: available subcutaneous adipose RNA-seq
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gravatar for  DataFanatic
2.4 years ago by
DataFanatic200
DataFanatic200 wrote:

I'm looking for any publicly available subcutaneous adipose RNA-seq data sets containing at least 100 individuals. Thank you!

ADD COMMENTlink modified 2.4 years ago by kristoffer.vittingseerup3.2k • written 2.4 years ago by DataFanatic200

You could be looking for a long while if you have a specific requirement for that large a sample and/or human data. Here is all that an ENA search brings up and it includes other organisms.

ADD REPLYlink written 2.4 years ago by genomax83k
0
gravatar for kristoffer.vittingseerup
2.4 years ago by
European Union
kristoffer.vittingseerup3.2k wrote:

The GTEx consortium have you covered - according to this there are 442 samples in relase 7

ADD COMMENTlink written 2.4 years ago by kristoffer.vittingseerup3.2k

Interesting. Do you know how you can download entire datasets for each of these samples? I can't even see the individual sample ID's.

Edit: Samples are not publicly available. One needs to get approval for access to the original data via dbGaP. These are post-mortem samples.

ADD REPLYlink modified 2.4 years ago • written 2.4 years ago by genomax83k

You can download the quantifications for the individual samples here.

ADD REPLYlink written 2.4 years ago by kristoffer.vittingseerup3.2k

I am excluding GTEx actually. Thanks

ADD REPLYlink written 2.4 years ago by DataFanatic200
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