Question: Unable to perform tbl2asn for submission of transcriptome to Genbank
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gravatar for arsilan324
9 months ago by
arsilan32460
arsilan32460 wrote:

Hi all,

I am need to submit transcriptome annotation of Juncus plant to NCBI, for which I have to create asn.1 file. This file can be generated using tbl2asn. When I try doing so, I see the following error.

ubt80:table2scan arslan$ tbl2asn -t template.sbt -i je.fasta -V v
[tbl2asn 25.6] File contains unexpected extra data
[tbl2asn 25.6] Validating je

Top few lines of feature table and fasta seq. are can be seen in the links given. I generated feature table it using GAG - genome annotation generator after validating the annotated gff3 file using genometools.

https://www.dropbox.com/s/kcb4hmdge9duvki/fasta.txt?dl=0 https://www.dropbox.com/s/mtu3rwbooa6vf5e/ft.txt?dl=0

I believe that there is no problem with tbl2asn installation. Since its running all fine. I would be very grateful for the help!

Best,

ADD COMMENTlink modified 9 months ago • written 9 months ago by arsilan32460
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