Question: annotation of SV (structural variants)
0
gravatar for Bogdan
6 months ago by
Bogdan530
Palo Alto, CA, USA
Bogdan530 wrote:

Dear all,

please could you let me know, any recommendation for a program/software that does the annotation of the SV (structural variants) with the closest gene(s), and other biological features ? thanks ;)

-- bogdan

annotation sv • 283 views
ADD COMMENTlink modified 6 months ago by harishk020110 • written 6 months ago by Bogdan530

I suggest using AnnotSV for SV annotation (with OMIM, DGV, 1000g, haploinsufficiency, TAD, ... and also with your own in-house information)

You can look at this post describing the annotSV tool: Annotation for SV and CNV

ADD REPLYlink written 12 days ago by LGMgeo80
0
gravatar for harishk0201
6 months ago by
harishk020110
harishk020110 wrote:

I tend to generally use intansv. link for the R Package

You'll need to create a custom tab delimited annotation file for it, but its really easy!

ADD COMMENTlink written 6 months ago by harishk020110

thank you very much ;)

ADD REPLYlink written 6 months ago by Bogdan530
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