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• annotation of SV (structural variants)
  Dear all, which tools would you recommend to use for the annotation of SV (structural variants)...
• annotating a vcf file containing Structural Variants
  Dear all, a simple question emerging from the SV calling efforts at their very beginning : what...
• annotation of SV (Structural Variants)
  Dear all, for a list of Structural Variants (including deletions, duplications, inversions, tran...
• Split Contig Structural Variant Calling On Bac Contigs Aligned With Bwa-Mem.
  Is there a split read SV caller that I can use to call Structural Variants (SV) on aligned BAC co...
• Popular Structural Variant Simulator
  I found there are a lot of SV simulators, which one is popular these days? Thanks! I know about ...
• Methods of classifying, not detecting, structural variation?
  I have completed a genome-wide scan for structural variants in genomic loci of interest for my di...
• Best Discordant Pair Structural Variant (Sv) Caller?
  What is the best discordant pair structural variant caller at the moment? The most popular one u...
• Best Genome Browser To Look At Structural Variation Calls
  I used multiple structural variant(SV) callers to call SVs for paired end sequencing data. Whic...
• computing the AF (allele fraction) for SV
  Dear all, happy new year ! talking about the calling of SV (Structural Variants) in cancer samp...
• Too short deletion in SV from 1000 Genomes
  Hi everybody, I downloaded the variants from 1000 Genomes project phase 3 (e.g ftp://ftp.1000geno...
• Wham - a structural variant caller and association testing framework
  Whole genome alignment metrics (Wham) is a structural variant (SV) caller.  It was designed to id...
• Structural Variants Standard Dataset
  I am testing structural variants (deletions, duplications, inversions, insertions) calling tools ...
• Linkage Disequilibrium Between Structural Variants (Sequence Data)
  Is there software available to calculate LD between structural variants from sequence data (prefe...
• filtering structural variants from normal-tumor pairs (whole-genome sequencing)
  Dear all, we have been sequencing pediatric tumors by using Illumina technology (normal-tumor p...
• Structural Variation Detection Using Gatk
  Hi. The GATK flow chart shows a "SV" box - along with SNPs and indels - in the possible outputs o...
• The interpretation of SV output file
  I am working on structural variant calling. However, the output file include SVs which have genot...
• Structural Variations (Sv) Annotation Workflow
  I want to know if there is some kind of pipeline i can use in order to annotate a given list of s...
• Running Delly for structural Variants
  I am running Delly commands to get SV and used these two commands . 1. delly ca...