Question: Error with fastq-dump
0
gravatar for pilyric
11 months ago by
pilyric0
pilyric0 wrote:

Hi, I have downloaded some .sra files from NCBI. But when I tried to convert sra files to fastq, an error occured:

fastq-dump -I --split-files SRR1055837.sra

2018-01-14T08:22:41 fastq-dump.2.8.2 err: data bad version while reading binary large object within virtual database module - failed SRR1055837.sra

So how to solve this? Thx a lot

sequence • 529 views
ADD COMMENTlink written 11 months ago by pilyric0

Hi, Did you try it on different sra ?

Best

ADD REPLYlink written 11 months ago by Titus740

I tried another sra and it worked. Thank you!

ADD REPLYlink written 10 months ago by pilyric0

I think when you run your command, you should connect to internet.

ADD REPLYlink written 11 months ago by siyavash_damdar20

Download the fastq files directly from EBA-ENA for this SRR#.

ADD REPLYlink written 11 months ago by genomax59k

ok, I'll try this. Thank you.

ADD REPLYlink written 10 months ago by pilyric0
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