I have 454 based metagenomic reads. I want to search for all ribosomal RNA in it is.
So I need a rRNA database for searching rRNA in my sequences using BLAST.
Can anybody recommend a good rRNA database that is not aligned format but just FastA format?
Also, if you have good method for rRNA prediction of metagenomic reads, please tell me about it.
Thank you for your reply in advance.