I'm trying to get the position of the start and end/length for both sequences in a pairwise alignment, but I do not get that information in output, what I have so far
alignments = pairwise2.align.localms(seq1, seq2, 2, -2, -3, -3) for a in alignments: print a print pairwise2.format_alignment(*a) break
... 232.0, 61, 189)
where 232 is the score, 61 is the start of something and 189 is the end. I need start and end for seq1 and seq2, any hints?