Question: Number of individuals in 1000genomes superpopulations?
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gravatar for spiral01
2.2 years ago by
spiral01100
spiral01100 wrote:

I am working with 1000genomes phase3 variation data and looking at shared variants between the superpopulations (EAS, AMR, AFR, EUR, SAS).

I need to know how many individuals are in each superpopulation to calculate nucleotide diversity and tajima's d for shared data (eg EAS and AFR shared variants). I cannot seem to find this information on the 1000genomes website, although it must definitely be there?

snp • 721 views
ADD COMMENTlink modified 2.2 years ago by trausch1.4k • written 2.2 years ago by spiral01100
3
gravatar for trausch
2.2 years ago by
trausch1.4k
Germany
trausch1.4k wrote:

http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/integrated_call_samples_v3.20130502.ALL.panel

ADD COMMENTlink written 2.2 years ago by trausch1.4k
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