Question: Extracting FASTA file from a list of KO numbers on the KeGG database
gravatar for joel.white332
2.1 years ago by
joel.white3320 wrote:

Hi there, I have been trying to download a list of gene sequences associated with specific KeGG pathways using R. Currently I have a list of KO, enzyme and reaction identifiers associated with my metabolic pathway but can not work out how to download the nt seq associated using R.

Ultimately I would like to feed my list into a code which will output the nt seq in FASTA format. I have seen bioconductor can do this but have ad no luck printing the sequences out.

Thanks in advance!

R kegg fasta gene • 779 views
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