Question

map metabolites to KEGG pathway

1

Entering edit mode

6.3 years ago

mike ▴ 60

Hi ALL,

I want to map a number of metabolites to KEGG pathway, however it looks like there is no package made for that purpose. In particular some metabolites are named just with abbreviations. Such as ' 26:0 Lyso PC ', '3:0 Lyso PI'... etc..

Thank you for any input!

metabolite; KEGG; • 2.2k views

ADD COMMENT • link updated 6.3 years ago by Kevin Blighe 87k • written 6.3 years ago by mike ▴ 60

score 2 · Answer 1 · 2018-01-24

2

Entering edit mode

6.3 years ago

Kevin Blighe 87k

You should take a look at MetaboAnalyst, which has been updated to improve KEGG mappings: MetaboAnalyst 3.0—making metabolomics more meaningful. It has become quite a popular tool in the realm of metabolomics.

ADD COMMENT • link 6.3 years ago by Kevin Blighe 87k

1

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wonderful. Thank you.

ADD REPLY • link 6.3 years ago by mike ▴ 60