Question: Write a file with CWL
0
gravatar for hoseintoossi
14 months ago by
hoseintoossi40
Iran/Tehran
hoseintoossi40 wrote:

Hi I want to write a cwl commandline tool that inputs some files and output a file with input file paths in each line. I use a docker with base command echo and argument $(inputs.input_files.map(x => x.path).join('\n')), but the output files does not hold the local file path but the ones copied by cwl (path in '/var/lib/cwl/..'). What shall I do? modify this one or write an expression tool?

cwl • 524 views
ADD COMMENTlink modified 14 months ago • written 14 months ago by hoseintoossi40
1
gravatar for hoseintoossi
14 months ago by
hoseintoossi40
Iran/Tehran
hoseintoossi40 wrote:

I found that solution is using InitialWorkDirRequirement requirement

ADD COMMENTlink written 14 months ago by hoseintoossi40
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 790 users visited in the last hour