Entering edit mode
6.2 years ago
pinn
▴
210
Hi,
Always I'm getting this error. Thanks for comments.
? 172 174 176
NB: Remember to use --merged when running the VEP with this cache!
- downloading ftp://ftp.ensembl.org/pub/release-91/variation/VEP/homo_sapiens_merged_vep_91_GRCh38.tar.gz
- unpacking homo_sapiens_merged_vep_91_GRCh38.tar.gz
- converting cache, this may take some time but will allow VEP to look up variants and frequency data much faster
- use CTRL-C to cancel if you do not wish to convert this cache now (you may run convert_cache.pl later)
length() used on @array (did you mean "scalar(@array)"?) at /usr/lib/x86_64-linux-gnu/perl/5.22/IO/Compress/Zlib/Extra.pm line 166.
IO::Compress::Gzip version 2.068 required--this is only version 2.015 at /usr/share/perl/5.22/Compress/Zlib.pm line 12.
BEGIN failed--compilation aborted at /usr/share/perl/5.22/Compress/Zlib.pm line 12.
Compilation failed in require at /home/likithreddy/src/ensembl-vep/Bio/EnsEMBL/Variation/ProteinFunctionPredictionMatrix.pm line 83.
BEGIN failed--compilation aborted at /home/likithreddy/src/ensembl-vep/Bio/EnsEMBL/Variation/ProteinFunctionPredictionMatrix.pm line 83.
Compilation failed in require at /home/likithreddy/src/ensembl-vep/Bio/EnsEMBL/Variation/TranscriptVariationAllele.pm line 74.
BEGIN failed--compilation aborted at /home/likithreddy/src/ensembl-vep/Bio/EnsEMBL/Variation/TranscriptVariationAllele.pm line 74.
Compilation failed in require at /home/likithreddy/src/ensembl-vep/Bio/EnsEMBL/Variation/TranscriptVariation.pm line 68.
BEGIN failed--compilation aborted at /home/likithreddy/src/ensembl-vep/Bio/EnsEMBL/Variation/TranscriptVariation.pm line 68.
Compilation failed in require at /home/likithreddy/src/ensembl-vep/Bio/EnsEMBL/Variation/DBSQL/TranscriptVariationAdaptor.pm line 88.
BEGIN failed--compilation aborted at /home/likithreddy/src/ensembl-vep/Bio/EnsEMBL/Variation/DBSQL/TranscriptVariationAdaptor.pm line 88.
Compilation failed in require at /home/likithreddy/src/ensembl-vep/Bio/EnsEMBL/Variation/VariationFeature.pm line 112.
BEGIN failed--compilation aborted at /home/likithreddy/src/ensembl-vep/Bio/EnsEMBL/Variation/VariationFeature.pm line 112.
Compilation failed in require at /home/likithreddy/src/ensembl-vep/Bio/EnsEMBL/Variation/DBSQL/VariationFeatureAdaptor.pm line 89.
BEGIN failed--compilation aborted at /home/likithreddy/src/ensembl-vep/Bio/EnsEMBL/Variation/DBSQL/VariationFeatureAdaptor.pm line 89.
Compilation failed in require at /home/likithreddy/src/ensembl-vep/modules/Bio/EnsEMBL/VEP/BaseVEP.pm line 59.
BEGIN failed--compilation aborted at /home/likithreddy/src/ensembl-vep/modules/Bio/EnsEMBL/VEP/BaseVEP.pm line 59.
Compilation failed in require at /usr/share/perl/5.22/base.pm line 97.
...propagated at /usr/share/perl/5.22/base.pm line 106.
BEGIN failed--compilation aborted at /home/likithreddy/src/ensembl-vep/modules/Bio/EnsEMBL/VEP/Config.pm line 63.
Compilation failed in require at ./convert_cache.pl line 50.
BEGIN failed--compilation aborted at ./convert_cache.pl line 50.
WARNING: Failed to run convert script
NB: Remember to use --refseq when running the VEP with this cache!
- downloading ftp://ftp.ensembl.org/pub/release-91/variation/VEP/homo_sapiens_refseq_vep_91_GRCh38.tar.gz
- unpacking homo_sapiens_refseq_vep_91_GRCh38.tar.gz
- converting cache, this may take some time but will allow VEP to look up variants and frequency data much faster
- use CTRL-C to cancel if you do not wish to convert this cache now (you may run convert_cache.pl later)
length() used on @array (did you mean "scalar(@array)"?) at /usr/lib/x86_64-linux-gnu/perl/5.22/IO/Compress/Zlib/Extra.pm line 166.
IO::Compress::Gzip version 2.068 required--this is only version 2.015 at /usr/share/perl/5.22/Compress/Zlib.pm line 12.
BEGIN failed--compilation aborted at /usr/share/perl/5.22/Compress/Zlib.pm line 12.
Compilation failed in require at /home/likithreddy/src/ensembl-vep/Bio/EnsEMBL/Variation/ProteinFunctionPredictionMatrix.pm line 83.
BEGIN failed--compilation aborted at /home/likithreddy/src/ensembl-vep/Bio/EnsEMBL/Variation/ProteinFunctionPredictionMatrix.pm line 83.
Compilation failed in require at /home/likithreddy/src/ensembl-vep/Bio/EnsEMBL/Variation/TranscriptVariationAllele.pm line 74.
BEGIN failed--compilation aborted at /home/likithreddy/src/ensembl-vep/Bio/EnsEMBL/Variation/TranscriptVariationAllele.pm line 74.
Compilation failed in require at /home/likithreddy/src/ensembl-vep/Bio/EnsEMBL/Variation/TranscriptVariation.pm line 68.
BEGIN failed--compilation aborted at /home/likithreddy/src/ensembl-vep/Bio/EnsEMBL/Variation/TranscriptVariation.pm line 68.
Compilation failed in require at /home/likithreddy/src/ensembl-vep/Bio/EnsEMBL/Variation/DBSQL/TranscriptVariationAdaptor.pm line 88.
BEGIN failed--compilation aborted at /home/likithreddy/src/ensembl-vep/Bio/EnsEMBL/Variation/DBSQL/TranscriptVariationAdaptor.pm line 88.
Compilation failed in require at /home/likithreddy/src/ensembl-vep/Bio/EnsEMBL/Variation/VariationFeature.pm line 112.
BEGIN failed--compilation aborted at /home/likithreddy/src/ensembl-vep/Bio/EnsEMBL/Variation/VariationFeature.pm line 112.
Compilation failed in require at /home/likithreddy/src/ensembl-vep/Bio/EnsEMBL/Variation/DBSQL/VariationFeatureAdaptor.pm line 89.
BEGIN failed--compilation aborted at /home/likithreddy/src/ensembl-vep/Bio/EnsEMBL/Variation/DBSQL/VariationFeatureAdaptor.pm line 89.
Compilation failed in require at /home/likithreddy/src/ensembl-vep/modules/Bio/EnsEMBL/VEP/BaseVEP.pm line 59.
BEGIN failed--compilation aborted at /home/likithreddy/src/ensembl-vep/modules/Bio/EnsEMBL/VEP/BaseVEP.pm line 59.
Compilation failed in require at /usr/share/perl/5.22/base.pm line 97.
...propagated at /usr/share/perl/5.22/base.pm line 106.
BEGIN failed--compilation aborted at /home/likithreddy/src/ensembl-vep/modules/Bio/EnsEMBL/VEP/Config.pm line 63.
Compilation failed in require at ./convert_cache.pl line 50.
BEGIN failed--compilation aborted at ./convert_cache.pl line 50.
WARNING: Failed to run convert script
- downloading ftp://ftp.ensembl.org/pub/release-91/variation/VEP/homo_sapiens_vep_91_GRCh38.tar.gz