Question: How to cite galaxy?
0
gravatar for statfa
2.6 years ago by
statfa530
statfa530 wrote:

Should we cite galaxy in papers if we use the tools implemented there? If yes, how? And what is "Galaxy version XXX" which is written in front of the names of tools? for example for Hisat it is written as: "HISAT2 A fast and sensitive alignment program (Galaxy Version 2.0.5.2)" is it the version of hisat implemented there or the version of galaxy?

Thanks so much

galaxi cite • 664 views
ADD COMMENTlink modified 2.6 years ago • written 2.6 years ago by statfa530

you should ask the galaxy community. Furthermore instead of citing all the versions, you'd better export the workflow and push it into github or whaterver.

ADD REPLYlink written 2.6 years ago by Pierre Lindenbaum130k

Thank you a lot. I just want to say that I downloaded fastq files from ebi then aligned rna-seq reads to hg38 using HISAT. and then I used featureCounts to obtain read counts. I think that's not too much to push it into github.

ADD REPLYlink written 2.6 years ago by statfa530
2
gravatar for ATpoint
2.6 years ago by
ATpoint38k
Germany
ATpoint38k wrote:

https://galaxyproject.org/citing-galaxy/

ADD COMMENTlink written 2.6 years ago by ATpoint38k

Thank you very much. It was helpful.

ADD REPLYlink written 2.6 years ago by statfa530
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