Question: How to cite galaxy?
0
gravatar for statfa
21 months ago by
statfa500
statfa500 wrote:

Should we cite galaxy in papers if we use the tools implemented there? If yes, how? And what is "Galaxy version XXX" which is written in front of the names of tools? for example for Hisat it is written as: "HISAT2 A fast and sensitive alignment program (Galaxy Version 2.0.5.2)" is it the version of hisat implemented there or the version of galaxy?

Thanks so much

galaxi cite • 515 views
ADD COMMENTlink modified 21 months ago • written 21 months ago by statfa500

you should ask the galaxy community. Furthermore instead of citing all the versions, you'd better export the workflow and push it into github or whaterver.

ADD REPLYlink written 21 months ago by Pierre Lindenbaum124k

Thank you a lot. I just want to say that I downloaded fastq files from ebi then aligned rna-seq reads to hg38 using HISAT. and then I used featureCounts to obtain read counts. I think that's not too much to push it into github.

ADD REPLYlink written 21 months ago by statfa500
2
gravatar for ATpoint
21 months ago by
ATpoint25k
Germany
ATpoint25k wrote:

https://galaxyproject.org/citing-galaxy/

ADD COMMENTlink written 21 months ago by ATpoint25k

Thank you very much. It was helpful.

ADD REPLYlink written 21 months ago by statfa500
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