Hi, I'am looking for an open source grafical user interface for filtering annotated variant. My principal constrain is that i have lots of variants. I need this software to be open source to add specific feature that we want. If you have some name or idea it will be very appreciated
I asked a similar question and compiled a list in another post - I updated it not long ago, so it's pretty current.
another solution: using linux and zenity ( https://en.wikipedia.org/wiki/Zenity ) it's possible to create a simple interface for a linux cmd-line. Here is a GUI for my VCF filter vcffilterjdk: http://lindenb.github.io/jvarkit/VcfFilterJdk.html
(you just have to fix the path to vcffilterjdk.jar...)