Question: MOSAIK Aligner how much min memory it requires ?
0
gravatar for pinn
3.0 years ago by
pinn70
pinn70 wrote:

Hi When ever I try to run MOSAIK Aligner Its showing error segmentation fault. Though I run on virgo server which has max of 32 CPU allocated to it. I feel though it was a hash based aligner it need a much memory any idea how many CPU can i allocate min CPU.

alignment • 709 views
ADD COMMENTlink written 3.0 years ago by pinn70
1

You need to read this: http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002202

Phrase your questions better and do some basic google searches before you post here please. I'm saying this based on reading all your questions here. Most of them can be answered by a couple of Google searches. And that's basically how you learn bioinformatics (anything CS related, actually)

I'd also point you to the Biostar Handbook (The Biostar Handbook. A bioinformatics e-book for beginners.) if you'd like a good learning resource.

ADD REPLYlink modified 3.0 years ago • written 3.0 years ago by _r_am32k
1

Hello pinninti1991reddy!

Please follow up on your questions. See C: Readgroups for a bam file ?

For this reason we have closed your question.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

ADD REPLYlink modified 2.8 years ago • written 2.8 years ago by _r_am32k
1

I'm reopening the post as user is providing feedback on other posts.

ADD REPLYlink written 2.7 years ago by _r_am32k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1612 users visited in the last hour
_