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6.1 years ago
Ric
▴
430
Hi, I was able to follow the first 4 steps of the DASCRUBBER pipeline but I am not sure how to do 5 - 8 steps.
DASmap [-p] <path:db> [ <reads:FILE> |<reads:range> ... ]
. What are<reads:FILE> |<reads:range>
?DASrealign [-v] [-l<int:(800)>] <block1> <block2> <source:las> <target:las>
. What are -l option,<block1> <block2>
,source:las
andtarget:las
?REPqv <subject:db> ....
Is subjet:db the source or patch db?REPtrim <subject:db> ...
Is subject:db the source or patch db?
Could anyone please give an example on how to use the above commands?
Thank you in advance.