I have been looking for guidelines on reporting the results of an experiment that involves hundreds of thousands of BLAST searches, but I have not found anything.
My question is; how would you go about reporting and summarizing such a vast array of information? Say, you have 50000 separate sequences and you have ran a BLAST search on all of them, and for each you have received at least 2-3 significant results. How would you report the finding? Are there any packages and software that can be helpful in the process?