Question: How to install preprocessCore package in Rstudio?
0
gravatar for k.kathirvel93
22 months ago by
k.kathirvel93210
India
k.kathirvel93210 wrote:

Hi everyOne, I am new to RNA-seq data anlaysis. Now I stuck with quantile normalization process. I need to know How can i install preprocessCore package in rstudio? I want to do Quantile normalization.

I tried to install the package externally. I have downloaded the package and I tried to install.But am getting this Error.

collect2: error: ld returned 1 exit status
/usr/share/R/share/make/shlib.mk:6: recipe for target 'preprocessCore.so' failed
make: *** [preprocessCore.so] Error 1
ERROR: compilation failed for package ‘preprocessCore’
* removing ‘/home/bif-workstation/R/x86_64-pc-linux-gnu-library/3.2/preprocessCore’
Warning in install.packages :
  installation of package ‘/home/bif-workstation/Downloads/preprocessCore_1.40.0.tar.gz’ had non-zero exit status
rna-seq sequence R • 1.7k views
ADD COMMENTlink modified 22 months ago by shaban.hiba810 • written 22 months ago by k.kathirvel93210
0
gravatar for shaban.hiba8
22 months ago by
shaban.hiba810
shaban.hiba810 wrote:

Try installing it with bioconductor biocLite

source("https://bioconductor.org/biocLite.R")

biocLite("preprocessCore")

ADD COMMENTlink modified 22 months ago • written 22 months ago by shaban.hiba810
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 828 users visited in the last hour