How to install preprocessCore package in Rstudio?
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Entering edit mode
3.4 years ago
k.kathirvel93 ▴ 260

Hi everyOne, I am new to RNA-seq data anlaysis. Now I stuck with quantile normalization process. I need to know How can i install preprocessCore package in rstudio? I want to do Quantile normalization.

I tried to install the package externally. I have downloaded the package and I tried to install.But am getting this Error.

collect2: error: ld returned 1 exit status
/usr/share/R/share/make/shlib.mk:6: recipe for target 'preprocessCore.so' failed
make: *** [preprocessCore.so] Error 1
ERROR: compilation failed for package ‘preprocessCore’
* removing ‘/home/bif-workstation/R/x86_64-pc-linux-gnu-library/3.2/preprocessCore’
Warning in install.packages :
  installation of package ‘/home/bif-workstation/Downloads/preprocessCore_1.40.0.tar.gz’ had non-zero exit status
R rna-seq sequence • 3.0k views
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Entering edit mode
3.4 years ago
shaban.hiba8 ▴ 10

Try installing it with bioconductor biocLite

source("https://bioconductor.org/biocLite.R")

biocLite("preprocessCore")

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