Question: What genome assembler to choose for an unpaired FASTQ data derived from a Birch chloroplast?
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oxfordsoccer • 10 wrote:
What genome assembler to choose for an unpaired FASTQ data derived from a Birch chloroplast?
And other tools for pre- and post-processing also
File type Conventional base calls Encoding Sanger / Illumina 1.9 (actually Ion Torrent data) Total Sequences 376768 Sequences flagged as poor quality 0 Sequence length 5-376 %GC 36
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modified 23 months ago
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Asaf ♦ 6.7k
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23 months ago by
oxfordsoccer • 10
You may want to try
tadpole.shfrom BBMap suite. It does well with small genomes. See guide here.Careful with this user.